diff --git a/README.md b/README.md index 3b1f64b6442a788294de60b5bae29c984198349f..5eb7985ebbed8e3d92fc738ad303a848e5b529d4 100644 --- a/README.md +++ b/README.md @@ -1 +1,68 @@ -# polars_loess +# Polars Loess + +This is a loess local regression (locally estimated scatterplot smoothing) implementation in Rust for Polars. + +**This is an early release. There is room for improvement in terms of performance, memory efficiency and feature set. +I value feedback from the community to see where to go next.** + +## Installation + +```bash +pip install polars-loess +``` + +## API + +```python +loess( + 'x-column', # Name of the existing x-values + 'y-column', # Name of the existing y-values + 'new-x-column', # Name of the new x values. y-values are interpolated for these x-values using loess + + # Optional float to specify the fraction of the data used in each local regression. + # Exactly one of frac or points must be specified. + frac=None, + + # Optional integer to specify the number of points used in each local regression. + # Exactly one of frac or points must be specified. + points=None, + + # Optional integer to specify the degree of the polynomial used in each local regression. + # Default is 1. + degree=None, +) +``` + + +## Example + +```python +import polars as pl +from polars_loess import loess + +df = pl.DataFrame({ + 'time': [ + 0.5578196, 2.0217271, 2.5773252, 3.4140288, 4.3014084, + 4.7448394, 5.1073781, 6.5411662, 6.7216176, 7.2600583, + 8.1335874, 9.1224379, 11.9296663, 12.3797674, 13.2728619, + 14.2767453, 15.3731026, 15.6476637, 18.5605355, 18.5866354 + ], + 'price': [ + 18.63654, 103.49646, 150.35391, 190.51031, 208.70115, + 213.71135, 228.49353, 233.55387, 234.55054, 223.89225, + 227.68339, 223.91982, 168.01999, 164.95750, 152.61107, + 160.78742, 168.55567, 152.42658, 221.70702, 222.69040, + ], +}) +result = df.with_columns(loess = loess('time', 'price', 'time', frac=0.5)) +print(result) +``` + +Another example can be found in `run.py`. The result looks like. + + + +## Acknowledgements + +* The loess implementation is based on https://github.com/joaofig/loess-rs +* The Python bindings are based on https://marcogorelli.github.io/polars-plugins-tutorial/ diff --git a/example.png b/example.png new file mode 100644 index 0000000000000000000000000000000000000000..735080a6aba0d6789e63e2ced9a5c7217ff7f4de Binary files /dev/null and b/example.png differ diff --git a/polars_loess/__init__.py b/polars_loess/__init__.py index 7f82cd5bbba00935b404d8920c64a2b5f06f9685..bece626a9c8b1a066e86fd985e893caaf1d01674 100644 --- a/polars_loess/__init__.py +++ b/polars_loess/__init__.py @@ -19,12 +19,12 @@ else: lib = Path(__file__).parent -def loess(x: IntoExpr, y: IntoExpr, newx: IntoExpr, *, frac: float = None, points: int = None) -> pl.Expr: +def loess(x: IntoExpr, y: IntoExpr, newx: IntoExpr, *, frac: float = None, points: int = None, degree: int = None) -> pl.Expr: return register_plugin( args=[x, y, newx], symbol="loess", is_elementwise=True, lib=lib, - kwargs={"frac": frac, "points": points}, + kwargs={"frac": frac, "points": points, "degree": degree}, ) diff --git a/pyproject.toml b/pyproject.toml index 53e5f26002d814081f3a39cf0df24351873311e2..d7d885ae63b3a91f9df41d505c81e57cdee02c47 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -5,18 +5,33 @@ readme = "README.md" license = "MIT" version = "0.0.0" + [project] name = "polars-loess" -requires-python = ">=3.8" +requires-python = ">=3.9" +authors = [ + {name = "Frank Sauerburger", email = "frank@sauerburger.com"} +] +description = "LOESS algorithm for Polars" +keywords = ["polars", "loess", "regression", "smoothing", "data"] classifiers = [ "Programming Language :: Rust", "Programming Language :: Python :: Implementation :: CPython", "Programming Language :: Python :: Implementation :: PyPy", ] +[project.urls] +"Homepage" = "https://gitlab.sauerburger.com/frank/polars-loess" + [tool.maturin] module-name = "polars_loess._internal" [[tool.mypy.overrides]] module = "polars.utils.udfs" ignore_missing_imports = true + +[tool.uv] +dev-dependencies = [ + "matplotlib>=3.9.2", + "numpy>=2", +] diff --git a/run.py b/run.py index 00258620c91fa3b8bf22ea746b2ac3e10e2fadb5..76028288293c985204cc3e50b566db7ed631e990 100644 --- a/run.py +++ b/run.py @@ -1,20 +1,27 @@ +import numpy as np +import matplotlib.pyplot as plt import polars as pl from polars_loess import loess +x = np.linspace(0, 20, 200) +def func(x): + return x * (x - 14)**2 df = pl.DataFrame({ - 'time': [0.5578196, 2.0217271, 2.5773252, 3.4140288, 4.3014084, - 4.7448394, 5.1073781, 6.5411662, 6.7216176, 7.2600583, - 8.1335874, 9.1224379, 11.9296663, 12.3797674, 13.2728619, - 14.2767453, 15.3731026, 15.6476637, 18.5605355, 18.5866354, - 18.7572812], - 'price': [18.63654, 103.49646, 150.35391, 190.51031, 208.70115, - 213.71135, 228.49353, 233.55387, 234.55054, 223.89225, - 227.68339, 223.91982, 168.01999, 164.95750, 152.61107, - 160.78742, 168.55567, 152.42658, 221.70702, 222.69040, - 243.18828] + 'time': x, + 'value': np.random.normal(loc=func(x), scale=20), }) -result = df.with_columns(loess = loess('time', 'price', 'time', frac=0.5)) -print(result) +result = df.with_columns( + frac05 = loess('time', 'value', 'time', frac=0.5, degree=2), +) + +plt.plot(df['time'], df['value'], 'o', label='data') +plt.plot(x, func(x), '-k', label='True') +plt.plot(df['time'], result['frac05'], label='Loess') +plt.legend(loc=2) +plt.xlabel('Time') +plt.ylabel('Value') +plt.xlim(0, 20) +plt.savefig('example.png', dpi=300) diff --git a/src/expressions.rs b/src/expressions.rs index 3c3a627f70d84bebcf6b01ae9644e60291fb9cf6..3eaca646036c8bdbdeee62ed6f431b291258858b 100644 --- a/src/expressions.rs +++ b/src/expressions.rs @@ -170,6 +170,7 @@ impl Loess { struct LoessParams { frac: Option<f64>, points: Option<usize>, + degree: Option<f64> } #[polars_expr(output_type=Float64)] @@ -184,12 +185,17 @@ fn loess(inputs: &[Series], kwargs: LoessParams) -> PolarsResult<Series> { _ => polars_bail!(InvalidOperation:format!("Either `frac` or `points` must be provided")), }; + let degree = match kwargs.degree { + Some(degree) => degree as usize, + None => 1, + }; + let xx = DVector::<f64>::from_iterator(x.len(), x.to_vec().iter().filter(|v| v.is_some()).map(|v| v.unwrap())); let yy = DVector::<f64>::from_iterator(y.len(), y.to_vec().iter().filter(|v| v.is_some()).map(|v| v.unwrap())); let loess: Loess = Loess::new(&xx, &yy); - let result = newx.apply(|optv| optv.map(|v| loess.estimate(v, window, true, 1))); + let result = newx.apply(|optv| optv.map(|v| loess.estimate(v, window, true, degree))); Ok(result.into_series()) } diff --git a/uv.lock b/uv.lock new file mode 100644 index 0000000000000000000000000000000000000000..b140671b22c9908312f1528c69fe9989fbe29dad --- /dev/null +++ b/uv.lock @@ -0,0 +1,470 @@ +version = 1 +requires-python = ">=3.9" +resolution-markers = [ + "python_full_version < '3.12'", + "python_full_version >= '3.12'", +] + 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